Genome sequencing of Ciboria shiraiana provides insights into the pathogenic mechanisms of hypertrophy sorosis scleroteniosis.
Identifieur interne : 000151 ( Main/Exploration ); précédent : 000150; suivant : 000152Genome sequencing of Ciboria shiraiana provides insights into the pathogenic mechanisms of hypertrophy sorosis scleroteniosis.
Auteurs : Panpan Zhu [Oman] ; Min Kou [Oman] ; Liu C Y [Oman] ; Shuai Zhang [Oman] ; Ruihua Lv [Oman] ; Xia Zhongqiang [Oman] ; Yu M D [Oman] ; Zhao A C [Oman]Source :
- Molecular plant-microbe interactions : MPMI [ 0894-0282 ] ; 2020.
Abstract
Ciboria shiraiana causes hypertrophy sorosis scleroteniosis in mulberry trees resulting in huge economic losses, and exploring its pathogenic mechanism at genomic level is important to develop new control methods. Here, genome sequencing of C. shiraiana based on PacBio RSII and Illumina HiSeq 2500 platform as well as manual gap filling was performed. Synteny analysis with Sclerotinia sclerotiorum revealed 16 putative chromosomes corresponding to 16 chromosomes of C. shiraiana. Screening of rapid evolution genes revealed that 97% and 2.4% of genes had undergone purifying selection and positive selection, respectively. When compared with S. sclerotiorum, fewer secreted effector proteins were found in C. shiraiana. The number of genes involved in pathogenicity, including secondary metabolites, CAZymes, and P450s, in C. shiraiana genome was comparable to that of other necrotrophs, but higher than that of biotrophs and saprotrophs. The growth-related genes and plant cell wall degradation related genes in C. shiraiana were expressed in different developmental and infection stages, and may be potential targets for prevention and control of this pathogen. These results provide new insights into C. shiraiana pathogenic mechanisms, especially host range and necrotrophy features, and lay foundation for further study on the underlying molecular mechanisms.
DOI: 10.1094/MPMI-07-20-0201-R
PubMed: 33021883
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genome sequencing of Ciboria shiraiana provides insights into the pathogenic mechanisms of hypertrophy sorosis scleroteniosis.</title><author><name sortKey="Zhu, Panpan" sort="Zhu, Panpan" uniqKey="Zhu P" first="Panpan" last="Zhu">Panpan Zhu</name><affiliation wicri:level="1"><nlm:affiliation>Chongqing, China; 597510051@qq.com.</nlm:affiliation><country wicri:rule="url">Oman</country><wicri:regionArea>Chongqing</wicri:regionArea></affiliation></author><author><name sortKey="Kou, Min" sort="Kou, Min" uniqKey="Kou M" first="Min" last="Kou">Min Kou</name><affiliation wicri:level="1"><nlm:affiliation>Chongqing, China; 1120057397@qq.com.</nlm:affiliation><country wicri:rule="url">Oman</country><wicri:regionArea>Chongqing</wicri:regionArea></affiliation></author><author><name sortKey="C Y, Liu" sort="C Y, Liu" uniqKey="C Y L" first="Liu" last="C Y">Liu C Y</name><affiliation wicri:level="1"><nlm:affiliation>Chongqing, China; 877645876@qq.com.</nlm:affiliation><country wicri:rule="url">Oman</country><wicri:regionArea>Chongqing</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Shuai" sort="Zhang, Shuai" uniqKey="Zhang S" first="Shuai" last="Zhang">Shuai Zhang</name><affiliation wicri:level="1"><nlm:affiliation>Chongqing, China; 1016182639@qq.com.</nlm:affiliation><country wicri:rule="url">Oman</country><wicri:regionArea>Chongqing</wicri:regionArea></affiliation></author><author><name sortKey="Lv, Ruihua" sort="Lv, Ruihua" uniqKey="Lv R" first="Ruihua" last="Lv">Ruihua Lv</name><affiliation wicri:level="1"><nlm:affiliation>Chongqing, China; 394730536@qq.com.</nlm:affiliation><country wicri:rule="url">Oman</country><wicri:regionArea>Chongqing</wicri:regionArea></affiliation></author><author><name sortKey="Zhongqiang, Xia" sort="Zhongqiang, Xia" uniqKey="Zhongqiang X" first="Xia" last="Zhongqiang">Xia Zhongqiang</name><affiliation wicri:level="1"><nlm:affiliation>Chongqing, China; 467581051@qq.com.</nlm:affiliation><country wicri:rule="url">Oman</country><wicri:regionArea>Chongqing</wicri:regionArea></affiliation></author><author><name sortKey="M D, Yu" sort="M D, Yu" uniqKey="M D Y" first="Yu" last="M D">Yu M D</name><affiliation wicri:level="1"><nlm:affiliation>Chongqing, China; yumd@163.com.</nlm:affiliation><country wicri:rule="url">Oman</country><wicri:regionArea>Chongqing</wicri:regionArea></affiliation></author><author><name sortKey="A C, Zhao" sort="A C, Zhao" uniqKey="A C Z" first="Zhao" last="A C">Zhao A C</name><affiliation wicri:level="1"><nlm:affiliation>Chongqing，ChinaChongqing, China, 400715; Zhaoaichun@hotmail.com.</nlm:affiliation><country wicri:rule="url">Oman</country><wicri:regionArea>Chongqing，ChinaChongqing, China</wicri:regionArea><wicri:noRegion>China</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2020">2020</date><idno type="RBID">pubmed:33021883</idno><idno type="pmid">33021883</idno><idno type="doi">10.1094/MPMI-07-20-0201-R</idno><idno type="wicri:Area/Main/Corpus">000076</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000076</idno><idno type="wicri:Area/Main/Curation">000076</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000076</idno><idno type="wicri:Area/Main/Exploration">000076</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genome sequencing of Ciboria shiraiana provides insights into the pathogenic mechanisms of hypertrophy sorosis scleroteniosis.</title><author><name sortKey="Zhu, Panpan" sort="Zhu, Panpan" uniqKey="Zhu P" first="Panpan" last="Zhu">Panpan Zhu</name><affiliation wicri:level="1"><nlm:affiliation>Chongqing, China; 597510051@qq.com.</nlm:affiliation><country wicri:rule="url">Oman</country><wicri:regionArea>Chongqing</wicri:regionArea></affiliation></author><author><name sortKey="Kou, Min" sort="Kou, Min" uniqKey="Kou M" first="Min" last="Kou">Min Kou</name><affiliation wicri:level="1"><nlm:affiliation>Chongqing, China; 1120057397@qq.com.</nlm:affiliation><country wicri:rule="url">Oman</country><wicri:regionArea>Chongqing</wicri:regionArea></affiliation></author><author><name sortKey="C Y, Liu" sort="C Y, Liu" uniqKey="C Y L" first="Liu" last="C Y">Liu C Y</name><affiliation wicri:level="1"><nlm:affiliation>Chongqing, China; 877645876@qq.com.</nlm:affiliation><country wicri:rule="url">Oman</country><wicri:regionArea>Chongqing</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Shuai" sort="Zhang, Shuai" uniqKey="Zhang S" first="Shuai" last="Zhang">Shuai Zhang</name><affiliation wicri:level="1"><nlm:affiliation>Chongqing, China; 1016182639@qq.com.</nlm:affiliation><country wicri:rule="url">Oman</country><wicri:regionArea>Chongqing</wicri:regionArea></affiliation></author><author><name sortKey="Lv, Ruihua" sort="Lv, Ruihua" uniqKey="Lv R" first="Ruihua" last="Lv">Ruihua Lv</name><affiliation wicri:level="1"><nlm:affiliation>Chongqing, China; 394730536@qq.com.</nlm:affiliation><country wicri:rule="url">Oman</country><wicri:regionArea>Chongqing</wicri:regionArea></affiliation></author><author><name sortKey="Zhongqiang, Xia" sort="Zhongqiang, Xia" uniqKey="Zhongqiang X" first="Xia" last="Zhongqiang">Xia Zhongqiang</name><affiliation wicri:level="1"><nlm:affiliation>Chongqing, China; 467581051@qq.com.</nlm:affiliation><country wicri:rule="url">Oman</country><wicri:regionArea>Chongqing</wicri:regionArea></affiliation></author><author><name sortKey="M D, Yu" sort="M D, Yu" uniqKey="M D Y" first="Yu" last="M D">Yu M D</name><affiliation wicri:level="1"><nlm:affiliation>Chongqing, China; yumd@163.com.</nlm:affiliation><country wicri:rule="url">Oman</country><wicri:regionArea>Chongqing</wicri:regionArea></affiliation></author><author><name sortKey="A C, Zhao" sort="A C, Zhao" uniqKey="A C Z" first="Zhao" last="A C">Zhao A C</name><affiliation wicri:level="1"><nlm:affiliation>Chongqing，ChinaChongqing, China, 400715; Zhaoaichun@hotmail.com.</nlm:affiliation><country wicri:rule="url">Oman</country><wicri:regionArea>Chongqing，ChinaChongqing, China</wicri:regionArea><wicri:noRegion>China</wicri:noRegion></affiliation></author></analytic><series><title level="j">Molecular plant-microbe interactions : MPMI</title><idno type="ISSN">0894-0282</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Ciboria shiraiana causes hypertrophy sorosis scleroteniosis in mulberry trees resulting in huge economic losses, and exploring its pathogenic mechanism at genomic level is important to develop new control methods. Here, genome sequencing of C. shiraiana based on PacBio RSII and Illumina HiSeq 2500 platform as well as manual gap filling was performed. Synteny analysis with Sclerotinia sclerotiorum revealed 16 putative chromosomes corresponding to 16 chromosomes of C. shiraiana. Screening of rapid evolution genes revealed that 97% and 2.4% of genes had undergone purifying selection and positive selection, respectively. When compared with S. sclerotiorum, fewer secreted effector proteins were found in C. shiraiana. The number of genes involved in pathogenicity, including secondary metabolites, CAZymes, and P450s, in C. shiraiana genome was comparable to that of other necrotrophs, but higher than that of biotrophs and saprotrophs. The growth-related genes and plant cell wall degradation related genes in C. shiraiana were expressed in different developmental and infection stages, and may be potential targets for prevention and control of this pathogen. These results provide new insights into C. shiraiana pathogenic mechanisms, especially host range and necrotrophy features, and lay foundation for further study on the underlying molecular mechanisms.</div></front></TEI><pubmed><MedlineCitation Status="Publisher" Owner="NLM"><PMID Version="1">33021883</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>06</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0894-0282</ISSN><JournalIssue CitedMedium="Print"><PubDate><Year>2020</Year><Month>Oct</Month><Day>06</Day></PubDate></JournalIssue><Title>Molecular plant-microbe interactions : MPMI</Title><ISOAbbreviation>Mol Plant Microbe Interact</ISOAbbreviation></Journal><ArticleTitle>Genome sequencing of Ciboria shiraiana provides insights into the pathogenic mechanisms of hypertrophy sorosis scleroteniosis.</ArticleTitle><ELocationID EIdType="doi" ValidYN="Y">10.1094/MPMI-07-20-0201-R</ELocationID><Abstract><AbstractText>Ciboria shiraiana causes hypertrophy sorosis scleroteniosis in mulberry trees resulting in huge economic losses, and exploring its pathogenic mechanism at genomic level is important to develop new control methods. Here, genome sequencing of C. shiraiana based on PacBio RSII and Illumina HiSeq 2500 platform as well as manual gap filling was performed. Synteny analysis with Sclerotinia sclerotiorum revealed 16 putative chromosomes corresponding to 16 chromosomes of C. shiraiana. Screening of rapid evolution genes revealed that 97% and 2.4% of genes had undergone purifying selection and positive selection, respectively. When compared with S. sclerotiorum, fewer secreted effector proteins were found in C. shiraiana. The number of genes involved in pathogenicity, including secondary metabolites, CAZymes, and P450s, in C. shiraiana genome was comparable to that of other necrotrophs, but higher than that of biotrophs and saprotrophs. The growth-related genes and plant cell wall degradation related genes in C. shiraiana were expressed in different developmental and infection stages, and may be potential targets for prevention and control of this pathogen. These results provide new insights into C. shiraiana pathogenic mechanisms, especially host range and necrotrophy features, and lay foundation for further study on the underlying molecular mechanisms.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Zhu</LastName><ForeName>Panpan</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Chongqing, China; 597510051@qq.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kou</LastName><ForeName>Min</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Chongqing, China; 1120057397@qq.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>C Y</LastName><ForeName>Liu</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Chongqing, China; 877645876@qq.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Shuai</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Chongqing, China; 1016182639@qq.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lv</LastName><ForeName>Ruihua</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Chongqing, China; 394730536@qq.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhongqiang</LastName><ForeName>Xia</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Chongqing, China; 467581051@qq.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>M D</LastName><ForeName>Yu</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Chongqing, China; yumd@163.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>A C</LastName><ForeName>Zhao</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>Chongqing，ChinaChongqing, China, 400715; Zhaoaichun@hotmail.com.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>10</Month><Day>06</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Mol Plant Microbe Interact</MedlineTA><NlmUniqueID>9107902</NlmUniqueID><ISSNLinking>0894-0282</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>10</Month><Day>6</Day><Hour>17</Hour><Minute>11</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>10</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>10</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>aheadofprint</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">33021883</ArticleId><ArticleId IdType="doi">10.1094/MPMI-07-20-0201-R</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Oman</li></country></list><tree><country name="Oman"><noRegion><name sortKey="Zhu, Panpan" sort="Zhu, Panpan" uniqKey="Zhu P" first="Panpan" last="Zhu">Panpan Zhu</name></noRegion><name sortKey="A C, Zhao" sort="A C, Zhao" uniqKey="A C Z" first="Zhao" last="A C">Zhao A C</name><name sortKey="C Y, Liu" sort="C Y, Liu" uniqKey="C Y L" first="Liu" last="C Y">Liu C Y</name><name sortKey="Kou, Min" sort="Kou, Min" uniqKey="Kou M" first="Min" last="Kou">Min Kou</name><name sortKey="Lv, Ruihua" sort="Lv, Ruihua" uniqKey="Lv R" first="Ruihua" last="Lv">Ruihua Lv</name><name sortKey="M D, Yu" sort="M D, Yu" uniqKey="M D Y" first="Yu" last="M D">Yu M D</name><name sortKey="Zhang, Shuai" sort="Zhang, Shuai" uniqKey="Zhang S" first="Shuai" last="Zhang">Shuai Zhang</name><name sortKey="Zhongqiang, Xia" sort="Zhongqiang, Xia" uniqKey="Zhongqiang X" first="Xia" last="Zhongqiang">Xia Zhongqiang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PlantPathoEffV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000151 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000151 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PlantPathoEffV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:33021883
|texte= Genome sequencing of Ciboria shiraiana provides insights into the pathogenic mechanisms of hypertrophy sorosis scleroteniosis.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:33021883" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PlantPathoEffV1
| This area was generated with Dilib version V0.6.38. |  |